VCFtools can convert VCF files into formats convenient for use in other programs. One such example is the ability to convert into PLINK format. The following function will output the variants in.ped and.map files./vcftools -vcf inputdata.vcf -plink -chr 1 -out outputinplink.

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For installation following the steps below:Download it from (http://www.ks.uiuc.edu/Research/vmd/) Then in the terminal type:

This will extract the folder to your downloads folder. You can then just

Then type your password. The 'sudo' command tells your computer that you request to be allowed the permission to install the program into your computers default directory (e.g. /usr/local) when you run the next set of commands from the terminal.Don't worry the install will find its way to the right place. You don't actually need to edit as the ReadMe file implies,

To test:

Or to run with a trajectory file:

NOTE: If you do not have administrative rights (i.e. you cannot use the 'su' or 'sudo' commands on your computer, then expect to see an error like:

To fix this then the only thing you need do is create a folder and call it 'install' then in that folder create another folder called 'lib64' and then change the command:

Vcftools Tutorial

To